fcs-flow-cytometry-toolkit

Read, inspect, filter and write Flow Cytometry Standard (FCS) files, versions 2.0 through 3.1, with the FlowIO Python library. Pull event matrices out as NumPy arrays, read TEXT segment metadata, separate scatter, fluorescence and time channels, survive offset errors and multi-dataset files, convert events to CSV or pandas, and generate new FCS files from arrays. Use when the user has .fcs output from a flow cytometer that needs inspecting, summarising, converting, filtering or regenerating. Not for gating, spillover compensation, FlowJo workspaces or GatingML analysis, and not for non-FCS file formats.

Version

v1.0.0

Size

16 KB

Updated

2026-10-10

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