scanpy-single-cell-analysis

Analyzes single-cell RNA-seq matrices with Scanpy: count validation, quality control, normalization, feature selection, neighborhoods, clustering, marker evidence, cell annotation, gene scoring and reproducible figures from AnnData, 10X or table inputs. Use when the user asks to "run QC on a scRNA-seq dataset", "cluster cells and find markers", "label cell types", "score a gene signature", "make a UMAP", or build a pseudotime trajectory. Not for clinical diagnosis, automatic cell-type labels without marker evidence, or treating cell-level tests as donor-level inference.

Version

v1.0.0

Size

34 KB

Updated

2026-10-02

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